Job ID: 122277

PhD position – Multimodal profiling of epilepsy onset and progression in preclinical models of cortical malformations

Position: Ph.D. Student

Deadline: 14 April 2025

Employment Start Date: 1 October 2025

Contract Length: 3 years

City: Marseille

Country: France

Institution: Aix-Marseille University

Department: INMED

Description:

The NeuroSchool PhD Program of Aix-Marseille University (France) has launched its annual calls for PhD contracts for students with a master’s degree in a non-French university and for   international co-supervised PhDs.

This project is one of the proposed projects. Not all proposed projects will be funded, check our website for details.

State of the art: Brain malformations are a major cause of drug-resistant epilepsy in children and adolescents. Studying the pathophysiological mechanisms that lead to these epilepsies is challenging because malformations are typically diagnosed only after the first seizure. In addition, it is impossible to directly study the pathological changes that occur in the brains of patients and contribute to the onset and progression of epilepsy. Preclinical models are therefore essential for a better understanding of the disease, its onset and progression, and ultimately for improved therapy. This project will combine electrophysiology to study brain activity and transcriptomics to measure gene expression changes in preclinical models of brain malformations. By correlating epilepsy-associated electrophysiological properties of anatomically identified brain regions with their underlying, spatially resolved, molecular changes, the project aims to 1) gain new insights into the onset and progression of epilepsy and 2) precisely delineate key pathophysiological mechanisms underlying circuit alterations in cortical malformations.

Methods: in vivo and in vitro electrophysiology; transcriptomics; in vivo genetic manipulations to induce MCDs (in utero electroporation); in vivo stereotactic injection of viral vectors to express candidate genes; histology.

Expected results: Identification of circuit and molecular changes detectable at different stages of disease progression that may serve as biomarkers or predictors of epilepsy outcome and as potential targets for therapy (some will be tested).

Feasibility: 3 murine models with cortical malformations; equipped in vivo setups for head-fixed and freely moving recordings; in-house in vivo imaging facility; project authorization for animal research (APAFIS#26835-2020080610441911 v2, to be renewed); ongoing local and international collaborations, including with human epileptologists and geneticists.

Expected candidate profile

Prior experience with rodent handling and surgeries; in vivo recordings including electrode preparation and stereotactic implantation; histology and microscopy; data analysis; prior experience with bioinformatics and transcriptomics is a plus.